Basic Statistics
Measure | Value |
---|---|
Filename | SRR3089604_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12789134 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 56 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAAAC | 30949 | 0.24199449313769017 | No Hit |
CTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATTCCC | 15383 | 0.12028179546793397 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGGACT | 8680 | 0.0 | 39.364094 | 1 |
ACTACCC | 9540 | 0.0 | 34.68178 | 5 |
GGGACTA | 9960 | 0.0 | 33.36125 | 2 |
CTACCCG | 9865 | 0.0 | 33.253353 | 6 |
GACTACC | 10800 | 0.0 | 30.722607 | 4 |
TACCCGC | 11230 | 0.0 | 29.75548 | 7 |
GGACTAC | 12910 | 0.0 | 26.50222 | 3 |
GTCCCTA | 4740 | 0.0 | 25.68021 | 8 |
ACCCGCT | 13045 | 0.0 | 25.183159 | 8 |
CGTTTTA | 2785 | 0.0 | 22.27542 | 3 |
GTCCGTA | 2990 | 0.0 | 22.005638 | 4 |
TAAGTCG | 2685 | 0.0 | 21.529697 | 8 |
CGCGTTT | 3040 | 0.0 | 21.489525 | 1 |
TCCCTAT | 5640 | 0.0 | 21.165655 | 9 |
ATAAGCG | 8470 | 0.0 | 20.752254 | 30-31 |
GACTGTC | 6030 | 0.0 | 20.030552 | 4 |
TAAGCGG | 8335 | 0.0 | 19.960653 | 32-33 |
GTTTAAG | 9065 | 0.0 | 19.675287 | 16-17 |
ACTTACG | 8840 | 0.0 | 19.671007 | 48-49 |
TCCGTAC | 3425 | 0.0 | 19.622421 | 5 |