FastQCFastQC Report
Mon 11 Dec 2017
SRR1698098_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1698098_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42818484
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC697920.16299502803508878TruSeq Adapter, Index 6 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG116600.048.6977243
CGTATGC118950.047.56216444
TATGCCG129750.043.57635546
TATCTCG126550.041.6893539
CGCCAAT155850.037.33023533
CTCGTAT163050.034.4816242
ACGCCAA172850.033.23316232
TCTCGTA161250.033.10858541
ATGCCGT174000.032.052847
GATCGGA208650.031.8405721
TACACGA99300.031.15479313
GTATGCC183650.031.0156845
GTCACGC185900.031.009429
AGTCACG187650.030.83122428
ACACGAC100150.030.54093214
ACACGTC194100.030.3805913
CGTCTGA195350.029.82828116
ATCGGAA221550.029.7951762
GCCGTCT188700.029.78046849
ACGTCTG200000.029.15227115