FastQCFastQC Report
Mon 11 Dec 2017
SRR1698098_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1698098_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42818484
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1954450.45645006955407386No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG516600.12064883007067695Illumina Single End PCR Primer 1 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA86250.050.6869746
CGTATCA100400.043.75605849
GCCGTAT116300.038.52536447
GATCGGA254350.035.5045971
CCGTATC127050.034.605148
ATCGGAA263600.033.7947432
TCGCCGT128650.033.6545545
GCGTCGT174450.032.0392311
AAGAGCG277750.031.4140557
TCGTGTA178400.030.44825214
GAGTGTA189050.030.1018427
TCGGAAG297950.029.969923
GTCGTGT186800.029.34133513
TGGTCGC156750.028.9786842
AATGCCG103950.027.27131824
CGTGTAG209150.026.941515
GGTCGCC171150.026.68642643
AGTGTAG213650.026.60325828
AGAGCGT215300.026.4810928
TCGTATG50850.026.29452946