FastQCFastQC Report
Mon 11 Dec 2017
SRR1772412_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1772412_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28675398
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAA5310881.8520684525459767No Hit
GGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTG3437491.1987592988247278No Hit
CTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTT1806680.6300453092229095No Hit
ATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCT1717600.5989803524261459No Hit
ACGTGGTGGACTTGATTTTACCAAAGATGATGAGAATGTGAACTCCCAAC1188810.4145748909919228No Hit
TGCCCCAGATCGACTTCCAGATCATAATTGCTCTAGTGAATAACTAAAGA1090020.3801237562596341No Hit
GTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTCCTT1010000.35221830225338113No Hit
TTGGAGATGATTCTGTACTACAATTCGGTGGAGGAACTTTAGGCCACCCT958760.3343493262063878No Hit
GGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTCCTTGGTAAC865490.3018231865517612No Hit
TGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTT781560.27255419436549755No Hit
ACTTAGAGAATTTGTGCGCTTGGGAGTCCCTGATTATTAAATAAACCAAG723050.25214994400426455No Hit
TGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGC721150.2514873551188374No Hit
TGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGG696390.24285277574874461No Hit
GTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTC696360.24284231381897473No Hit
GGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTAT669680.23353817094360815No Hit
CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTA606130.21137631638103158No Hit
GCGCTTGGGAGTCCCTGATTATTAAATAAACCAAGGATTTTACCATGACT595160.20755073739517058No Hit
GGAATTAGGTGTAGCTATATTACAAGCTTATGTTTTTACGATCTTAATCT581670.20284635630863782No Hit
CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCT562520.19616815780551677No Hit
ATCTGGTGGAGATCATATTCACGCGGGTACAGTAGTAGGTAAACTTGAAG557390.19437916781486345No Hit
ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGC512370.17867929854016323No Hit
GGTGGAGATCATATTCACGCGGGTACAGTAGTAGGTAAACTTGAAGGAGA497700.17356341488268096No Hit
GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATT365720.12753789851495698No Hit
CACTACCTGGTGTTCTGCCTGTGGCTTCAGGGGGTATTCACGTTTGGCAT365710.12753441120503367No Hit
CACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTAT357890.12480733484501244No Hit
GGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTT344820.12024942077525828No Hit
TCGCTGGAAGCACCGGTGGTCTTCTACGTAAAGCGCAAGTGGAAGAGTTC340840.11886147142578457No Hit
GGGCATGGATGTTCTTATTTGGGCATCTTGTTTGGGCTACAGGATTTATG337050.11753978096485357No Hit
AAAAACATATCTTTCCGTAGCACCGGTACTAAGTACTCTATGGTTCGGTT332390.11591469454059539No Hit
TAACAGGGGGATTCACCGCAAATACTAGTTTGTCTCATTATTGCCGAGAT327670.11426868425679741No Hit
GCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAA320370.11172294801278781No Hit
TAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGT313180.10921557217793455No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCATCCG790900.066.8030249
TGCATCC792650.066.619938
CTGCATC804000.065.650677
GCTGCAT809650.065.244946
GGGAAGC863750.061.0726851
AGCTGCA911800.057.892445
AAGCTGC939500.056.4206354
GGAAGCT1019600.051.82232
TGCCCCA211400.051.1568531
GAAGCTG1103400.047.988763
CCCCAGA229850.046.8388523
GTCGTGA1095400.046.47595694
GATCGAC230300.045.5441748
ATCGACT237100.044.297499
GCCCCAG249150.043.5311972
ACGTGGT298000.041.986491
GTGGACT311500.040.6936346
TGCGTCC859450.040.235616
GCGTCCT860950.040.2091457
CCTGCCC44100.040.0894621