Basic Statistics
Measure | Value |
---|---|
Filename | SRR1698098_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 42818484 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 51 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC | 69792 | 0.16299502803508878 | TruSeq Adapter, Index 6 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGTATG | 11660 | 0.0 | 48.69772 | 43 |
CGTATGC | 11895 | 0.0 | 47.562164 | 44 |
TATGCCG | 12975 | 0.0 | 43.576355 | 46 |
TATCTCG | 12655 | 0.0 | 41.68935 | 39 |
CGCCAAT | 15585 | 0.0 | 37.330235 | 33 |
CTCGTAT | 16305 | 0.0 | 34.48162 | 42 |
ACGCCAA | 17285 | 0.0 | 33.233162 | 32 |
TCTCGTA | 16125 | 0.0 | 33.108585 | 41 |
ATGCCGT | 17400 | 0.0 | 32.0528 | 47 |
GATCGGA | 20865 | 0.0 | 31.840572 | 1 |
TACACGA | 9930 | 0.0 | 31.154793 | 13 |
GTATGCC | 18365 | 0.0 | 31.01568 | 45 |
GTCACGC | 18590 | 0.0 | 31.0094 | 29 |
AGTCACG | 18765 | 0.0 | 30.831224 | 28 |
ACACGAC | 10015 | 0.0 | 30.540932 | 14 |
ACACGTC | 19410 | 0.0 | 30.38059 | 13 |
CGTCTGA | 19535 | 0.0 | 29.828281 | 16 |
ATCGGAA | 22155 | 0.0 | 29.795176 | 2 |
GCCGTCT | 18870 | 0.0 | 29.780468 | 49 |
ACGTCTG | 20000 | 0.0 | 29.152271 | 15 |