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VEP run statistics

VEP version (API) 91 (91)
Annotation sourcesgallus_gallus_core_91_5 on ensembldb.ensembl.org
Speciesgallus_gallus
Command line options
--database --everything --input_file GGA_UD_1014.samtools.vcf --output_file GGA_UD_1014.samtools.vep.txt --species gallus_gallus
Start time2017-12-19 15:03:49
End time2017-12-19 15:24:29
Run time1240 seconds
Input fileGGA_UD_1014.samtools.vcf
Output fileGGA_UD_1014.samtools.vep.txt

General statistics

Lines of input read387
Variants processed387
Variants filtered out0
Novel / existing variants148 (38.2) / 239 (61.8)
Overlapped genes207
Overlapped transcripts337
Overlapped regulatory features0

Variant classes

 
 

Consequences (most severe)

 
 

Consequences (all)

 
 

Coding consequences

 
 

SIFT summary

 
 

Variants by chromosome

 
 

Distribution of variants on chromosome 1

 

Distribution of variants on chromosome 2

 

Distribution of variants on chromosome 3

 

Distribution of variants on chromosome 4

 

Distribution of variants on chromosome 5

 

Distribution of variants on chromosome 6

 

Distribution of variants on chromosome 7

 

Distribution of variants on chromosome 8

 

Distribution of variants on chromosome 9

 

Distribution of variants on chromosome 10

 

Distribution of variants on chromosome 11

 

Distribution of variants on chromosome 12

 

Distribution of variants on chromosome 13

 

Distribution of variants on chromosome 14

 

Distribution of variants on chromosome 15

 

Distribution of variants on chromosome 16

 

Distribution of variants on chromosome 17

 

Distribution of variants on chromosome 18

 

Distribution of variants on chromosome 19

 

Distribution of variants on chromosome 20

 

Distribution of variants on chromosome 21

 

Distribution of variants on chromosome 22

 

Distribution of variants on chromosome 23

 

Distribution of variants on chromosome 24

 

Distribution of variants on chromosome 25

 

Distribution of variants on chromosome 26

 

Distribution of variants on chromosome 27

 

Distribution of variants on chromosome 28

 

Distribution of variants on chromosome 30

 

Distribution of variants on chromosome 31

 

Distribution of variants on chromosome 32

 

Distribution of variants on chromosome 33

 

Distribution of variants on chromosome LGE64

 

Distribution of variants on chromosome MT

 

Distribution of variants on chromosome W

 

Distribution of variants on chromosome Z

 

Position in protein