FastQCFastQC Report
Mon 11 Dec 2017
SRR1772412_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1772412_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28675398
Sequences flagged as poor quality0
Sequence length99
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT10058533.5077211482818824No Hit
AGAGGCATACCATCAGAAAAACTTCCCTGACCAATTGGATAGATCAAGAA2290890.7989043430190577No Hit
TGCCCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT1554310.5420360686885671No Hit
GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCAT1309310.45659697556769746No Hit
ACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGAAGTTGCGGTCAA920420.3209789799604525No Hit
CCTAGAGGCATACCATCAGAAAAACTTCCCTGACCAATTGGATAGATCAA907900.3166128679364799No Hit
GAGGCATACCATCAGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAA804600.2805889564287826No Hit
TGCCTGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT778470.2714766155991976No Hit
TGCCCTAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT698780.2436862428204135No Hit
GCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG645830.22522093677653574No Hit
TGTCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT622560.2171059665850148No Hit
CTTTCCATACTTCACAAGCAGCAGCTAGTTCAGGACTCCATTTGCAAGCT604030.2106439812971384No Hit
GGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCA581450.2027696354903252No Hit
AGGGGCATACCATCAGAAAAACTTCCCTGACCAATTGGATAGATCAAGAA580240.2023476709896058No Hit
GCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAA540590.1885204871437181No Hit
AGACTAACACTAACGAATTATCCATTTGTAGATGGAGCCTCAACAGCAGC447950.15621404801425948No Hit
ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACT444810.155119032698343No Hit
CAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGC411330.14344351907513192No Hit
TCACAGGCAGCAGCTAGTTCAGGACTCCATTTGCAAGCTTCACGGATAAT380460.13267819334190234No Hit
TCACAAGCAGCAGCTAGTTCAGGACTCCATTTGCAAGCTTCACGGATAAT363910.12690669541883953No Hit
TGCTCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT321210.11201588204634509No Hit
TTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCC299610.10448329261201536No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT292010.10183293707030676No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCCGA1354550.074.5857851
AATCTGT2139050.072.61017
GCCCGAA1473600.072.585742
ATCTGTA2171800.071.551568
CCGAATC1655000.070.480924
CCCGAAT1567950.069.9243243
CGAATCT1722350.069.793165
GAATCTG1907350.068.8311166
TCTGTAA2278400.068.222489
TGCCCTA120650.058.417541
CTGGGGG46550.057.7069442
GCCCGGA60700.053.4611321
CTAGGGG45850.052.6075332
TAGGGGC45600.052.492033
GCCCGTA44150.052.0196761
GTCCGAA124050.051.851252
ACTGGAG175350.051.833721
AGGCAGC108550.051.566735
ACTAACG188800.050.775699
CTGGAGG218600.050.153092