FastQCFastQC Report
Mon 11 Dec 2017
SRR1334787_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1334787_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10785745
Sequences flagged as poor quality0
Sequence length100
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC196964918.26159435440018TruSeq Adapter, Index 12 (100% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAAGCTCGTATGC750210.6955569596722341TruSeq Adapter, Index 12 (98% over 50bp)
GAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCCGTCT627040.581359933875685TruSeq Adapter, Index 12 (100% over 50bp)
GGGGCCTAGCTGAAGTTCTCTTTGTTAGGTTGTTCTAGCTAACTCATTAT408710.378935344753654No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCC372970.3457990152743273TruSeq Adapter, Index 12 (100% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAACCTCGTATGC307200.28482038097507406TruSeq Adapter, Index 12 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGGAATCTCGTATGC154110.14288303682314019TruSeq Adapter, Index 12 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTTGTAATCTCGTATGC143600.13313869371100467TruSeq Adapter, Index 12 (98% over 50bp)
GAGCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC127420.11813741192657531TruSeq Adapter, Index 12 (98% over 50bp)
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAA121910.11302881720270598No Hit
GGGCCTAGCTGAAGTTCTCTTTGTTAGGTTGTTCTAGCTAACTCATTATG116910.10839306881443979No Hit
CATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC113470.10520367392331266TruSeq Adapter, Index 12 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTCATCTCGTATGC111820.10367387695518485TruSeq Adapter, Index 12 (98% over 50bp)

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CATCGGA61100.052.776811
GAGCACA5874950.044.6614389
CGGAAGA6006750.044.6101234
AGAGCAC5912200.044.4603278
GGGCCTA111100.044.4535182
GAAGAGC6008900.044.3884776
AAGAGCA5980150.044.296197
GGAAGAG6099650.044.2773865
ATCGGAA6057400.044.0581632
TCGGAAG6035000.044.0217483
AATCGGA72150.043.845671
GATCGGA5956200.043.7345241
ACCGGAA43000.040.36352
TTGAAAA3242600.039.3619960-61
TGAAAAA3198000.039.00961762-63
GCTCGTA134850.038.74749840-41
GCTTGAA3330300.038.6073358-59
CTTGAAA3261450.038.5061660-61
GAAAAAA3303900.038.3681462-63
TAAGCTC126900.038.08172638-39