Basic Statistics
Measure | Value |
---|---|
Filename | SRR3089603_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 15423408 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 55 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAAAC | 46993 | 0.30468622758342384 | No Hit |
CTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATTCCC | 23261 | 0.15081621390032604 | No Hit |
CCCGACTGTCCCTATTAATCATTACTCCGATCCCGAAGGCCAACACAATA | 17691 | 0.11470227591722917 | No Hit |
CAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGG | 17329 | 0.11235519413089506 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGGACT | 11595 | 0.0 | 43.412346 | 1 |
ACTACCC | 13060 | 0.0 | 37.20972 | 5 |
CTACCCG | 13360 | 0.0 | 36.23346 | 6 |
GACTACC | 14390 | 0.0 | 34.03188 | 4 |
TACCCGC | 15045 | 0.0 | 32.987606 | 7 |
GGGACTA | 15565 | 0.0 | 31.43334 | 2 |
GGACTAC | 17350 | 0.0 | 28.659277 | 3 |
ACCCGCT | 17905 | 0.0 | 27.298456 | 8 |
GTCCCTA | 7010 | 0.0 | 26.884712 | 8 |
TAAGTCG | 3570 | 0.0 | 25.01292 | 8 |
GTCCGTA | 3855 | 0.0 | 24.870518 | 4 |
CGCGTTT | 4085 | 0.0 | 23.586111 | 1 |
GACTGTC | 8120 | 0.0 | 23.498983 | 4 |
CGTTTTA | 3920 | 0.0 | 23.498981 | 3 |
TCCCTAT | 8295 | 0.0 | 23.059881 | 9 |
CGACTGT | 8355 | 0.0 | 22.331766 | 3 |
GCGTTTT | 4225 | 0.0 | 22.248062 | 2 |
TCCGTAC | 4380 | 0.0 | 22.104065 | 5 |
ATAAGCG | 12490 | 0.0 | 21.410603 | 30-31 |
CCCGCTG | 23170 | 0.0 | 21.359024 | 9 |