Basic Statistics
Measure | Value |
---|---|
Filename | SRR1334787_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10785745 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC | 1969649 | 18.26159435440018 | TruSeq Adapter, Index 12 (100% over 50bp) |
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAAGCTCGTATGC | 75021 | 0.6955569596722341 | TruSeq Adapter, Index 12 (98% over 50bp) |
GAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCCGTCT | 62704 | 0.581359933875685 | TruSeq Adapter, Index 12 (100% over 50bp) |
GGGGCCTAGCTGAAGTTCTCTTTGTTAGGTTGTTCTAGCTAACTCATTAT | 40871 | 0.378935344753654 | No Hit |
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCC | 37297 | 0.3457990152743273 | TruSeq Adapter, Index 12 (100% over 50bp) |
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAACCTCGTATGC | 30720 | 0.28482038097507406 | TruSeq Adapter, Index 12 (98% over 50bp) |
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGGAATCTCGTATGC | 15411 | 0.14288303682314019 | TruSeq Adapter, Index 12 (98% over 50bp) |
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTTGTAATCTCGTATGC | 14360 | 0.13313869371100467 | TruSeq Adapter, Index 12 (98% over 50bp) |
GAGCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC | 12742 | 0.11813741192657531 | TruSeq Adapter, Index 12 (98% over 50bp) |
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAA | 12191 | 0.11302881720270598 | No Hit |
GGGCCTAGCTGAAGTTCTCTTTGTTAGGTTGTTCTAGCTAACTCATTATG | 11691 | 0.10839306881443979 | No Hit |
CATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC | 11347 | 0.10520367392331266 | TruSeq Adapter, Index 12 (98% over 50bp) |
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTCATCTCGTATGC | 11182 | 0.10367387695518485 | TruSeq Adapter, Index 12 (98% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CATCGGA | 6110 | 0.0 | 52.77681 | 1 |
GAGCACA | 587495 | 0.0 | 44.661438 | 9 |
CGGAAGA | 600675 | 0.0 | 44.610123 | 4 |
AGAGCAC | 591220 | 0.0 | 44.460327 | 8 |
GGGCCTA | 11110 | 0.0 | 44.453518 | 2 |
GAAGAGC | 600890 | 0.0 | 44.388477 | 6 |
AAGAGCA | 598015 | 0.0 | 44.29619 | 7 |
GGAAGAG | 609965 | 0.0 | 44.277386 | 5 |
ATCGGAA | 605740 | 0.0 | 44.058163 | 2 |
TCGGAAG | 603500 | 0.0 | 44.021748 | 3 |
AATCGGA | 7215 | 0.0 | 43.84567 | 1 |
GATCGGA | 595620 | 0.0 | 43.734524 | 1 |
ACCGGAA | 4300 | 0.0 | 40.3635 | 2 |
TTGAAAA | 324260 | 0.0 | 39.36199 | 60-61 |
TGAAAAA | 319800 | 0.0 | 39.009617 | 62-63 |
GCTCGTA | 13485 | 0.0 | 38.747498 | 40-41 |
GCTTGAA | 333030 | 0.0 | 38.60733 | 58-59 |
CTTGAAA | 326145 | 0.0 | 38.50616 | 60-61 |
GAAAAAA | 330390 | 0.0 | 38.36814 | 62-63 |
TAAGCTC | 12690 | 0.0 | 38.081726 | 38-39 |