FastQCFastQC Report
Mon 11 Dec 2017
SRR3089604_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3089604_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12789134
Sequences flagged as poor quality0
Sequence length100
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAAAC309490.24199449313769017No Hit
CTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATTCCC153830.12028179546793397No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGACT86800.039.3640941
ACTACCC95400.034.681785
GGGACTA99600.033.361252
CTACCCG98650.033.2533536
GACTACC108000.030.7226074
TACCCGC112300.029.755487
GGACTAC129100.026.502223
GTCCCTA47400.025.680218
ACCCGCT130450.025.1831598
CGTTTTA27850.022.275423
GTCCGTA29900.022.0056384
TAAGTCG26850.021.5296978
CGCGTTT30400.021.4895251
TCCCTAT56400.021.1656559
ATAAGCG84700.020.75225430-31
GACTGTC60300.020.0305524
TAAGCGG83350.019.96065332-33
GTTTAAG90650.019.67528716-17
ACTTACG88400.019.67100748-49
TCCGTAC34250.019.6224215