Basic Statistics
Measure | Value |
---|---|
Filename | SRR3089604_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12789134 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 56 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAAAC | 29465 | 0.23039089276881453 | No Hit |
CTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATTCCC | 14760 | 0.11541047267156636 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGGACT | 8820 | 0.0 | 36.86721 | 1 |
GGGACTA | 9500 | 0.0 | 33.28466 | 2 |
ACTACCC | 9320 | 0.0 | 33.117104 | 5 |
CTACCCG | 10115 | 0.0 | 30.250612 | 6 |
GACTACC | 10595 | 0.0 | 29.044579 | 4 |
TACCCGC | 11185 | 0.0 | 28.11313 | 7 |
GTCCCTA | 5010 | 0.0 | 26.830078 | 8 |
GTCCGTA | 3560 | 0.0 | 26.169985 | 4 |
TAAGTCG | 2710 | 0.0 | 24.800495 | 8 |
GGACTAC | 13370 | 0.0 | 24.142431 | 3 |
TCCGTAC | 4085 | 0.0 | 23.726824 | 5 |
ACCCGCT | 13385 | 0.0 | 23.139854 | 8 |
TCCCTAT | 5960 | 0.0 | 22.782381 | 9 |
CGTTTTA | 2990 | 0.0 | 22.661028 | 3 |
GACTGTC | 6015 | 0.0 | 22.529165 | 4 |
CGCGTTT | 3395 | 0.0 | 21.900202 | 1 |
CGACTGT | 6025 | 0.0 | 21.554617 | 3 |
TTAAGTC | 3425 | 0.0 | 20.173248 | 7 |
GCGTTTT | 3335 | 0.0 | 20.035076 | 2 |
ATAAGCG | 8235 | 0.0 | 19.671158 | 30-31 |