FastQCFastQC Report
Mon 11 Dec 2017
SRR3089603_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3089603_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15423408
Sequences flagged as poor quality0
Sequence length100
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAAAC429190.27827183201014977No Hit
CTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATTCCC241100.15632083389092735No Hit
CAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGG222970.14456597400522633No Hit
CCCGACTGTCCCTATTAATCATTACTCCGATCCCGAAGGCCAACACAATA185270.12012260844036546No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGACT109350.040.5795631
ACTACCC126250.033.7273565
CTACCCG127450.033.4464846
GGGACTA139500.031.0316942
GACTACC140200.030.4733244
TACCCGC146050.030.3454197
GTCCCTA69700.030.0725068
GTCCGTA45500.028.9553384
TCCGTAC50600.026.5008265
GGACTAC165250.026.423393
GACTGTC79150.026.3350894
ACCCGCT171400.024.9790048
CGACTGT81800.024.3890323
TCCCTAT89450.024.1099919
CGTTTTA37450.022.992243
CGCGTTT39300.022.8694271
TAAGTCG35850.022.679038
GCGTTTT38900.021.8937852
ACTGTCC105350.021.1694165
ATAAGCG111500.021.04298830-31