FastQCFastQC Report
Mon 11 Dec 2017
SRR3089604_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3089604_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12789134
Sequences flagged as poor quality0
Sequence length100
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAAAC294650.23039089276881453No Hit
CTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATTCCC147600.11541047267156636No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGACT88200.036.867211
GGGACTA95000.033.284662
ACTACCC93200.033.1171045
CTACCCG101150.030.2506126
GACTACC105950.029.0445794
TACCCGC111850.028.113137
GTCCCTA50100.026.8300788
GTCCGTA35600.026.1699854
TAAGTCG27100.024.8004958
GGACTAC133700.024.1424313
TCCGTAC40850.023.7268245
ACCCGCT133850.023.1398548
TCCCTAT59600.022.7823819
CGTTTTA29900.022.6610283
GACTGTC60150.022.5291654
CGCGTTT33950.021.9002021
CGACTGT60250.021.5546173
TTAAGTC34250.020.1732487
GCGTTTT33350.020.0350762
ATAAGCG82350.019.67115830-31