Basic Statistics
Measure | Value |
---|---|
Filename | SRR1698098_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 42818484 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 51 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 195445 | 0.45645006955407386 | No Hit |
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG | 51660 | 0.12064883007067695 | Illumina Single End PCR Primer 1 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 8625 | 0.0 | 50.68697 | 46 |
CGTATCA | 10040 | 0.0 | 43.756058 | 49 |
GCCGTAT | 11630 | 0.0 | 38.525364 | 47 |
GATCGGA | 25435 | 0.0 | 35.504597 | 1 |
CCGTATC | 12705 | 0.0 | 34.6051 | 48 |
ATCGGAA | 26360 | 0.0 | 33.794743 | 2 |
TCGCCGT | 12865 | 0.0 | 33.65455 | 45 |
GCGTCGT | 17445 | 0.0 | 32.03923 | 11 |
AAGAGCG | 27775 | 0.0 | 31.414055 | 7 |
TCGTGTA | 17840 | 0.0 | 30.448252 | 14 |
GAGTGTA | 18905 | 0.0 | 30.10184 | 27 |
TCGGAAG | 29795 | 0.0 | 29.96992 | 3 |
GTCGTGT | 18680 | 0.0 | 29.341335 | 13 |
TGGTCGC | 15675 | 0.0 | 28.97868 | 42 |
AATGCCG | 10395 | 0.0 | 27.271318 | 24 |
CGTGTAG | 20915 | 0.0 | 26.9415 | 15 |
GGTCGCC | 17115 | 0.0 | 26.686426 | 43 |
AGTGTAG | 21365 | 0.0 | 26.603258 | 28 |
AGAGCGT | 21530 | 0.0 | 26.481092 | 8 |
TCGTATG | 5085 | 0.0 | 26.294529 | 46 |