Basic Statistics
Measure | Value |
---|---|
Filename | SRR3089603_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 15423408 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 56 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAAAC | 42919 | 0.27827183201014977 | No Hit |
CTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATTCCC | 24110 | 0.15632083389092735 | No Hit |
CAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGG | 22297 | 0.14456597400522633 | No Hit |
CCCGACTGTCCCTATTAATCATTACTCCGATCCCGAAGGCCAACACAATA | 18527 | 0.12012260844036546 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGGACT | 10935 | 0.0 | 40.579563 | 1 |
ACTACCC | 12625 | 0.0 | 33.727356 | 5 |
CTACCCG | 12745 | 0.0 | 33.446484 | 6 |
GGGACTA | 13950 | 0.0 | 31.031694 | 2 |
GACTACC | 14020 | 0.0 | 30.473324 | 4 |
TACCCGC | 14605 | 0.0 | 30.345419 | 7 |
GTCCCTA | 6970 | 0.0 | 30.072506 | 8 |
GTCCGTA | 4550 | 0.0 | 28.955338 | 4 |
TCCGTAC | 5060 | 0.0 | 26.500826 | 5 |
GGACTAC | 16525 | 0.0 | 26.42339 | 3 |
GACTGTC | 7915 | 0.0 | 26.335089 | 4 |
ACCCGCT | 17140 | 0.0 | 24.979004 | 8 |
CGACTGT | 8180 | 0.0 | 24.389032 | 3 |
TCCCTAT | 8945 | 0.0 | 24.109991 | 9 |
CGTTTTA | 3745 | 0.0 | 22.99224 | 3 |
CGCGTTT | 3930 | 0.0 | 22.869427 | 1 |
TAAGTCG | 3585 | 0.0 | 22.67903 | 8 |
GCGTTTT | 3890 | 0.0 | 21.893785 | 2 |
ACTGTCC | 10535 | 0.0 | 21.169416 | 5 |
ATAAGCG | 11150 | 0.0 | 21.042988 | 30-31 |