FastQCFastQC Report
Mon 11 Dec 2017
SRR3089603_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3089603_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15423408
Sequences flagged as poor quality0
Sequence length100
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAAAC469930.30468622758342384No Hit
CTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATTCCC232610.15081621390032604No Hit
CCCGACTGTCCCTATTAATCATTACTCCGATCCCGAAGGCCAACACAATA176910.11470227591722917No Hit
CAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGG173290.11235519413089506No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGACT115950.043.4123461
ACTACCC130600.037.209725
CTACCCG133600.036.233466
GACTACC143900.034.031884
TACCCGC150450.032.9876067
GGGACTA155650.031.433342
GGACTAC173500.028.6592773
ACCCGCT179050.027.2984568
GTCCCTA70100.026.8847128
TAAGTCG35700.025.012928
GTCCGTA38550.024.8705184
CGCGTTT40850.023.5861111
GACTGTC81200.023.4989834
CGTTTTA39200.023.4989813
TCCCTAT82950.023.0598819
CGACTGT83550.022.3317663
GCGTTTT42250.022.2480622
TCCGTAC43800.022.1040655
ATAAGCG124900.021.41060330-31
CCCGCTG231700.021.3590249