TransAtlasDB

An Informatics system for Transcriptome Analysis Data



View the Project on GitHub



TransAtlasDB ToolKit

The TransAtlasDB toolkit is written in Perl and can be run on diverse hardware systems where the standard Perl modules have been installed.

This Perl toolkit requires the Perl modules to be installed on the local system.

The package consist of the following files:

INSTALL-tad.pL

install TransAtlasDB system

connect-tad.pL

verify connection details or create connection details (used only when requested)

tad-import.pl

import samples metadata and RNAseq data into the database

tad-export.pl

view or export reports based on user-defined queries

tad-interact.pl

interactive interface to explore database content


other folders includes:

schema/

  contains the TransAtlasDB relational database schema

example/

  contains sample files and templates

lib/

  contains required routines and modules

MODULE DEPENDENCIES
The following modules have to be installed:
  1. DBD::mysql
    2. Version: 4.038
  2. Spreadsheet::Read
    3. Version: 0.66
  3. Spreadsheet::ParseExcel
    4. Version: 0.65
  4. Spreadsheet::XLSX
    5. Version: 0.15
  5. Text::TabularDisplay
    6. Version: 1.38
  6. Sort::Key
    7. Version: 1.33

Please click the menu items to navigate through this repository. If you have questions, comments and bug reports, please email me directly.

Thank you very much for your help and support!